| 3. Round | 04/08/2024 | Fakel Voronezh | - | FK Krasnodar | 0:0 | ||||
| 5. Round | 18/08/2024 | FK Krasnodar | - | FK Nizhny Novgorod | 2:1 | ||||
| 6. Round | 25/08/2024 | Dinamo Moskva | - | FK Krasnodar | 0:1 | ||||
| 7. Round | 01/09/2024 | Lokomotiv Moskva | - | FK Krasnodar | 0:3 |  |
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| 9. Round | 21/09/2024 | Akron Tolyatti | - | FK Krasnodar | 2:5 | |
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| 10. Round | 28/09/2024 | FK Krasnodar | - | Zenit St. Petersburg | 2:0 | |
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| 11. Round | 06/10/2024 | FK Krasnodar | - | FK Khimki | 4:0 | |
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| 12. Round | 19/10/2024 | Spartak Moskva | - | FK Krasnodar | 0:3 | ||||
| 13. Round | 28/10/2024 | Krylia Sovetov | - | FK Krasnodar | 1:2 | |
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| 14. Round | 03/11/2024 | FK Krasnodar | - | FK Orenburg | 4:0 | |
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| 15. Round | 10/11/2024 | Rubin Kazan | - | FK Krasnodar | 1:1 |
Colombia